Scholar Universe: Rod A. Wing

Partial Publication List

"In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons." Chromosoma 114, No. 2 2005, pp. 103-17.
Yang, Tae-Jin; Lee, Seunghee; Chang, Song-Bin; Yu, Yeisoo; de Jong, Hans; Wing, Rod A

From Abstract:

in the 326-kb stretch. A large block of trinucleotide microsatellite (CAA)n occupies the centromere and large portions of the flanking pericentromere heterochromatin blocks of chromosome 12 and most... of tomato chromosome 12. A total of 84% of the sequence (270 kb) was composed of a nested complex

"A fine physical map of the rice chromosome 4." Genome research 12, No. 5 2002, pp. 817-23.
Zhao, Qiang; Zhang, Yu; Cheng, Zhukuan; Chen, Mingsheng; Wang, Shengyue; Feng, Qi; Huang, Yucheng; Li, Ying; Tang, Yesheng; Zhou, Bo; Chen, Zhehua; Yu, Shuliang; Zhu, Jingjie; Hu, Xin; Mu, Jie; Ying, Kai; Hao, Pei; Zhang, Lei; Lu, Yiqi; Liu, Yilei; Yu, Zhen; Fan, Danlin; Weng, Qijun; Chen, Ling; Lu, Tingting; Liu, Xiaohui; Jia, Peixin; Sun, Tongguo; Wu, Yongrui; Zhang, Yujun; Lu, Ying; Li, Can; Wang, Rong; Lei, Haiyan; Li, Tao; Hu, Hao; Wu, Mei; Zhang, Runquan; Guan, Jianping; Zhu, Jia; Fu, Gang; Gu, Minghong; Hong, Guofan; Xue, Yongbiao; Wing, Rod; Jiang, Jiming; Han, Bin

From Abstract:

% of the chromosome, indicating that this chromosome is likely very difficult to sequence. To our knowledge, this map...As part of an international effort to completely sequence the rice genome, we have produced a fine bacterial artificial chromosome (BAC)-based physical map of the Oryza sativa japonica Nipponbare

"Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza" The Plant Journal 53, No. 6 2008, pp. 950-959.
Roulin, Anne; Piegu, Benoît; Wing, Rod A; Panaud, Olivier

"A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus" Molecular Biology and Evolution 25, No. 7 2008, pp. 1415-1428.
Grover, Corrinne E.; Yu, Yeisoo; Wing, Rod A.; Paterson, Andrew H.; Wendel, Jonathan F.

From Abstract:

of the mechanisms that affect genome size, we conducted a phylogenetic analysis of indel rates for 2 genomic regions in 4 Gossypium genomes: the 2 coresident genomes (A[sub]T and D[sub]T) of tetraploid cotton... the rates of sequence gain or loss along each branch, partitioned by mechanism, and how these changed

"Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set." The Plant cell 20, No. 12 2008, pp. 3191-209.
Ammiraju, Jetty S; Lu, Fei; Sanyal, Abhijit; Yu, Yeisoo; Song, Xiang; Jiang, Ning; Pontaroli, Ana Clara; Rambo, Teri; Currie, Jennifer; Collura, Kristi; Talag, Jayson; Fan, Chuanzhu; Goicoechea, Jose Luis; Zuccolo, Andrea; Chen, Jinfeng; Bennetzen, Jeffrey L; Chen, Mingsheng; Jackson, Scott; Wing, Rod A

From Abstract:

and compared nine orthologous genomic regions encompassing the Adh1-Adh2 genes (from six diploid genome types) with the rice reference sequence. Our analysis revealed the architectural complexities and dynamic evolution of this region that have occurred over the past approximately 15 million years